A-Cell: graphical user interface for the construction of biochemical reaction models

نویسنده

  • Kazuhisa Ichikawa
چکیده

SUMMARY A-Cell is a tool for constructing models of complex and complicated biochemical reactions. An important feature of A-Cell is its graphical user interface for constructing biochemical reactions. In addition, it has a capability of importing previously constructed models, combining them, and constructing a comprehensive model. The simulation program for the model is automatically generated by A-cell.

برای دانلود متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید

ثبت نام

اگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید

منابع مشابه

Modelsaz: An Object-Oriented Computer-Aided Modeling Environment

Modeling and simulation of processing plants are widely used in industry. Construction of a mathematical model for a plant is a time-consuming and error-prone task. In light of extensive advancements in computer science (both hardware and software), computers are becoming a necessary instrument in industrial activities. Many software tools for modeling, simulation and optimization of proces...

متن کامل

Morpheus: a user-friendly modeling environment for multiscale and multicellular systems biology

Morpheus is a modeling environment for the simulation and integration of cell-based models with ordinary differential equations and reaction-diffusion systems. It allows rapid development of multiscale models in biological terms and mathematical expressions rather than programming code. Its graphical user interface supports the entire workflow from model construction and simulation to visualiza...

متن کامل

Stochastic simulation GUI for biochemical networks

MOTIVATION This article describes the development of a useful graphical user interface for stochastic simulation of biochemical networks which allows model builders to run stochastic simulations of their models and perform statistical analysis on the results. These include the construction of correlations, power-spectral densities and transfer functions between selected inputs and outputs. AV...

متن کامل

تحلیل میزان درک کاربران از نمادهای تصویری محیط رابط گرافیکی نرم‌افزار سیمرغ

Purpose: This research is devoted to study the icons in graphical user interface of Simorgh library software and analyze the users’ understanding of and interaction with this software in Birjand University. Methodology: The methodology of this research is of survey type and it is an applied study. To measure the responders’ understanding of icons in different pages of search section in Simorgh...

متن کامل

Software Implementation and Experimentation with a New Genetic Algorithm for Layout Design

This paper discusses the development of a new GA for layout design. The GA was already designed and reported. However the implementation used in the earlier work was rudimentary and cumbersome, having no suitable Graphical User Interface, GUI. This paper discusses the intricacies of the algorithm and the GA operators used in previous work. It also reports on implementation of a new GA operator ...

متن کامل

ذخیره در منابع من


  با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید

برای دانلود متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید

ثبت نام

اگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید

عنوان ژورنال:
  • Bioinformatics

دوره 17 5  شماره 

صفحات  -

تاریخ انتشار 2001